Monday, March 31, 2025
Lecture Notes Chapter 5: Life is Stranger than Fiction
Reality is Stranger than Fiction: What can Artificial Life do about Advances in Biology?
Labels: #ArtificialLife, #biocomplexity, #biology, #genetics, #genomics
Monday, March 24, 2025
Links for "Computation in Cellular Automata" lecture
Conway's Game of Life
Game of Life Demo
Game of Life Applet
3-D Game of Life
Recursive Universe of Game of Life
Game of Life Reveals Long-Sought Repeating Patterns
Turing Machine Implemented in Game of Life
Rule 110
Rule 110 and Universal Computation
Computation Theory of Cellular Automata
A Computational Mechanics Reading List by Cosma Shalizi
Game of Life Demo
Game of Life Applet
3-D Game of Life
Recursive Universe of Game of Life
Game of Life Reveals Long-Sought Repeating Patterns

Rule 110 and Universal Computation
Computation Theory of Cellular Automata
A Computational Mechanics Reading List by Cosma Shalizi
Labels: #cellularAutomata, #Computation, #DensityTask, #emergentComputation, #GameofLife, #UniversalComputation, Class Links
Lecture Notes (Chapter 4): Self-organization and emergent complex behavior
4. Self-Organization and Emergent Complex Behavior
Labels: #DynamicalSystems, #evolvability, #geneRegulation, #robustness, #self-organization
Monday, March 17, 2025
Links for "Automata Networks, Self-Organization and Criticality Hypothesis" lecture
Cybernetic Beginnings of Boolean Networks via Warren McCulloch and Stuart Kauffman
Random Boolean Networks Tutorial by Carlos Gershenson
Random Boolean Networks Demo by Wolfram
BooleSim by Mathias Bock
Discrete Dynamics Lab
Booleannet tool for simulating biological regulatory networks in a boolean formalism by Istvan Albert.
CANA Control and Redundancy in Boolean Networks by Rion Correia and CASCI.
Muramator Robot
Spontaneous Order and Self Organization @ Scholarpedia
Boolean networks beyond Systems Biology: Musical Morphogenesis
Devin Acker's Elementary CA Demo
Cellular Automata Rules
Cellab
New Kind of Science Applets
Wolfram CA Demos
Langton's Lambda Parameter
Edge Of Chaos CA
Lambda Parameter Applet
Random Boolean Networks Tutorial by Carlos Gershenson
Random Boolean Networks Demo by Wolfram
BooleSim by Mathias Bock
Discrete Dynamics Lab
Booleannet tool for simulating biological regulatory networks in a boolean formalism by Istvan Albert.
CANA Control and Redundancy in Boolean Networks by Rion Correia and CASCI.
Muramator Robot
Spontaneous Order and Self Organization @ Scholarpedia

Boolean NK Networks from the Wolfram Demonstrations Project by Garrett Neske
Boolean networks beyond Systems Biology: Musical Morphogenesis
Devin Acker's Elementary CA Demo
Cellular Automata Rules
Cellab
New Kind of Science Applets
Wolfram CA Demos
Langton's Lambda Parameter
Edge Of Chaos CA
Lambda Parameter Applet
Labels: #BooleanNetworks, #cellularAutomata, #edgeOfChaos, #self-organization, Class Links